rs240886415 SNP Detail

Summary

• ID
  rs240886415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127127692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGCCTG GGGCTCCTCT
  GCTGATGAAA GCCAGGTCCC ACACACTGGA AGACCAAGGG AGTTTTCCCT AGAGGACAAC
  CCTGCAGAGA AACACTCAGG GCAATATTGC ATCTGCAGTC CCCAGAGACA GCCAGCTCCG
  CTCTGCCTTT AGGCTCAGTG GGCTTAATTC TCTATAAGGG AACTTGGGGG AGGGGCTTTT
  Y
  CCCCATTCAT TCCTAACAAA TGCCTAATAA GCACCCACTA TGTACCAAGT ATCTGGGGAC
  CCAGGGTATA TTAGGAGCAA AAGATAAAAC TGTTCTCAAT AAAACTTACA TTTCAGTATA
  AAGCAAAAGG GAAAAAAAAA ACAAAAGCAG GGCAGAATAG TTCAGGGCGG TGACTAGAGG
  TTGTCATCAG AAGCCAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382182470	MGP_WTSI_10_126728879	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240886415					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382182470	MGP_WTSI_10_126728879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127127692 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2350	CpG island 2350	600 bp distal
Ddit3	DNA-damage inducible transcript 3	within coordinates
Gm4189	predicted gene 4189	within coordinates
Gm20492	predicted gene 20492	1984 bp downstream
Gm66222	predicted gene, 66222	1310 bp downstream
Rr369092	regulatory region 369092	1054 bp downstream
Rr402324	regulatory region 402324	190 bp downstream
Rr440866	regulatory region 440866	1804 bp distal
Rr440867	regulatory region 440867	984 bp distal
Rr440868	regulatory region 440868	1183 bp distal
Rr440869	regulatory region 440869	within coordinates
Rr440870	regulatory region 440870	1185 bp proximal
Tssr96179	transcription start site region 96179	1809 bp downstream
Tssr96180	transcription start site region 96180	1020 bp downstream
Tssr99764	transcription start site region 99764	1463 bp upstream