rs240893639 SNP Detail

Summary

• ID
  rs240893639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36055727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAAGTTC GAGACCAGTC
  TGGGCTAGTA GTCCTGCACC TGTCTTTAAA ATCTAAGATG TTTTCTTGAA AGATTCGAAC
  TTTTAGAAAG TCTGGATACA AATTGGCTTG CTTGTGTATT TTCGAGAAGG TTCCTACTTA
  TCTGGCCCAT TGGCCAGCAA AAGAGAACCC ATCCCTCTGG AGTTCACCAG AAATGAATTC
  Y
  TTCCTTCAGG AAGGATATCT TATATTGAGT AAGTTTAGAC TTTTATCGGT AGAGTCATCA
  CATAGTTTCA AAACGTCCCT GGGAGTACTT GCCACTGGCT TTGTTTGTGT GGCTGGATAT
  CTTTTTTTCC TACAGAGTTA TAAGAACTCT AGTTATAGAG GTTAATATTT CCTCAGGTTT
  TCATTTAGTT GTTTACTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357548910	MGP_WTSI_3_35900500	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	T	T	C	C	C	T	T	T	T	C	C	C	T	C	C	T	C	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240893639					SNP	T	T	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	T	T	C	C	C	T	T	T	T	C	C	C	T	C	C	T	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357548910	MGP_WTSI_3_35900500	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36055727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13078	CpG island 13078	819 bp distal
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	900 bp upstream
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	within coordinates
Rr397641	regulatory region 397641	723 bp downstream
Rr575296	regulatory region 575296	1655 bp distal
Rr575297	regulatory region 575297	1133 bp distal
Rr575298	regulatory region 575298	410 bp distal
Rr575299	regulatory region 575299	787 bp distal
Tssr28858	transcription start site region 28858	1138 bp downstream
Tssr33012	transcription start site region 33012	970 bp upstream
Tssr33013	transcription start site region 33013	931 bp upstream
Tssr33014	transcription start site region 33014	918 bp upstream
Tssr33015	transcription start site region 33015	896 bp upstream