rs240894039 SNP Detail

Summary

• ID
  rs240894039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36556374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGTCTG TGACCAACAG
  AATGTCCACT TCCAGAGTGA GGGGGATGAG ATGGCATTCA GATCCGCCTC ATACCGGATC
  TCCTGGCATT TTCTACGGAG GGTGCCTTGA TGATTTGGGA GTTTCCCATC ACCCCAGCGC
  TGGCTACAGT ATACTGTGGA TTAAGATTAG AAAGGGGAAA GGAGGTATAC CTTGGAAGTA
  Y
  CCTATCACAG GAGCATTAGG CTCAGGGTTT TTTTGTTTGT TTCTTGTTTT GTTTTTGTCT
  TAACCTTTTT AAAATGTATC ATGGTGTGCA GTCCATATGT AACACTGCTT TGATGGTTTA
  TTGTTGCTGT TTTGTACATA TGATTTTTAT TTTTTTGATT GGAAGTGGCT TGTTGTCTTA
  TTCTTGTTTT TTAAGTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324923065	CHEV_15_36485984	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240894039					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36556374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7030	CpG island 7030	609 bp distal
Rr311658	regulatory region 311658	373 bp distal
Snx31	sorting nexin 31	656 bp upstream
Tssr134019	transcription start site region 134019	881 bp upstream
Tssr134020	transcription start site region 134020	690 bp upstream
Tssr134021	transcription start site region 134021	650 bp upstream
Tssr134022	transcription start site region 134022	637 bp upstream