rs240898305 SNP Detail

Summary

• ID
  rs240898305
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:67971942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCTTTC TCATTCAACT
  TCATCAGTCA TTCAAGTCCC AGAAAAAAAA AAAAATCTAA AACCAACCAA CTCATTGAGC
  TTCCCTTAAC CAACTCCAGA TAAATGCCTC CCCACACCCC AGCCCCCGTC TGCCCCCAAA
  CAAGCCCTCC AGAGCTCTCA AAGCACATAT GTTTATTACT TAGAGGGACA GTTACTGGGG
  R
  AAAAAAACTC ACGTCTGACC GCCAGGGAGC CTCTTAATTA TTATTTACCT CTGGACACAC
  AGGGTTAGCC GCTGGTGCCT TTAGGACATT TTAGGTTGGA CTCAATTTAC ATACACACGA
  CTTCCTACTA GTTTGTTTTT CTGCGGCGGT AAGGAGTGAA ACGCAGCTAA GGCAACACTT
  TCTTTCCAAA GTAGGGAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380752598	MGP_WTSI_10_67598860	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240898305					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380752598	MGP_WTSI_10_67598860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67971942 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arid5b	AT-rich interaction domain 5B			Intron
				mRNA-UTR
Cpgi1679	CpG island 1679			331 bp proximal
Rr384864	regulatory region 384864			87 bp upstream
Rr433196	regulatory region 433196			1230 bp distal
Rr433197	regulatory region 433197			within coordinates
Rr433198	regulatory region 433198			422 bp proximal
Rr433199	regulatory region 433199			504 bp proximal
Tssr3230	transcription start site region 3230			613 bp downstream
Tssr3231	transcription start site region 3231			629 bp downstream
Tssr3232	transcription start site region 3232			695 bp downstream
Tssr93877	transcription start site region 93877			891 bp upstream
Tssr93878	transcription start site region 93878			1670 bp upstream
Tssr97989	transcription start site region 97989			828 bp upstream
Tssr97990	transcription start site region 97990			811 bp upstream
Tssr97991	transcription start site region 97991			459 bp downstream
Tssr97992	transcription start site region 97992			501 bp downstream
Tssr97993	transcription start site region 97993			515 bp downstream
Tssr97994	transcription start site region 97994			538 bp downstream
Tssr97995	transcription start site region 97995			572 bp downstream
Tssr97996	transcription start site region 97996			590 bp downstream
Tssr97997	transcription start site region 97997			601 bp downstream
Tssr97998	transcription start site region 97998			667 bp downstream
Tssr97999	transcription start site region 97999			1092 bp downstream
Tssr98000	transcription start site region 98000			1249 bp downstream