rs240900324 SNP Detail

Summary

• ID
  rs240900324
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43627677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTCGTCA GGGAAATGTG
  GATCAAAGGA ACTTTAAGAG TCTACTGCAC TCTGACTTGG ATGGTCAACA TTAGGAACTC
  AAATGACTGT AAATGCCAGG AAGATGTGAA GAATGGAAAC TTTTACATTT GATAAGAGTG
  TAAATTAGTA AATTAGACTG CTTTGGAAAC CAGTCTGTAG GTTTCTCAAA GAACTAAAAC
  Y
  ATAGCTACCG TCTGTCCCGG CTATGGCACA GTTGGACACA TACATAAAGG ATGTGACGTC
  ATAGTATTGC ACACTTTGCA GATCCATGAT CATCGCCGCT TCTGGCTGCT CTAGTCACCG
  TAGCTAGGGA GTGGATGAAG GGTAGGTGTC TATCAACGGA AGAATCAAGA ATGCAAATGC
  TTTACAGATG TTTTTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269113	CHEV_2_43593185	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240900324					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43627677 () rs orientation: forward

Symbol	Name	Function Class
Rr373109	regulatory region 373109	1641 bp downstream
Rr556296	regulatory region 556296	within coordinates
Rr556297	regulatory region 556297	716 bp proximal
Tssr17595	transcription start site region 17595	1859 bp upstream
Tssr23873	transcription start site region 23873	1010 bp downstream
Tssr23874	transcription start site region 23874	1351 bp downstream