rs240902672 SNP Detail

Summary

• ID
  rs240902672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90183212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCGCCCGG GCTTGGGGGA
  CTCCGCCACC GGACTGTGCC CCTCTCGGAC CAGCAGCCGC TGTTCCCTCT CACAGCCGAT
  CGGGGCACCA GACGGGACCG CGGGCGCGAT CTGGGCGATC GATCCTCGGA GGACGAACTT
  CTCGGGGGCG GGTCCCCGGT CGCCCGGTCG CCAGCTATTG TCTGCGCGCG GCGCTAGCAC
  R
  GAGGCGCGGG GGGCGTGAGC ACAGAGACCC GGGCCGGGCG GGGCCGGGTC CAGGGCGGCG
  GCAGGAGGAG CCAGGGCAGC CCCGGGAGCC GGAGGAGGAG CGGCTGCGAG CGCGGGAGCC
  GAGCGAGCGC GATGCCGGCA GCGGCGGGGG ACGGGCTCTT GGGCGAGCCG GCGGCACCGG
  GGGGCGATGG AGGCGCGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397293387	MGP_WTSI_16_90386569	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240902672					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397293387	MGP_WTSI_16_90386569	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90183212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8424	CpG island 8424	within coordinates
Gm60085	predicted gene, 60085	313 bp downstream
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519118	regulatory region 519118	1927 bp distal
Rr519119	regulatory region 519119	1195 bp distal
Rr519120	regulatory region 519120	301 bp distal
Rr519121	regulatory region 519121	170 bp proximal
Rr519122	regulatory region 519122	627 bp proximal
Tssr139286	transcription start site region 139286	439 bp downstream
Tssr139287	transcription start site region 139287	380 bp downstream
Tssr139288	transcription start site region 139288	355 bp downstream
Tssr139289	transcription start site region 139289	301 bp downstream
Tssr139290	transcription start site region 139290	272 bp downstream
Tssr139291	transcription start site region 139291	58 bp upstream