rs240904746 SNP Detail

Summary

• ID
  rs240904746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26493848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCATGAT TGCTTTCCTC
  TCATTTGATC AAGTGGGTGT CTGGCCATGT CCTCTGGGAT TTCCCAGGTG AACTAAGCAC
  ACAGGACTTA ACTAAAAAAA AAAATCACAA TCTTCAGGGG GAATGTGACT CAAATTTCAC
  ATAGAAAAAT CTACATAGGA GTTGGTTAAT ACACACGTGC AATCCCTAGC ACTTGAGAGG
  R
  TGAGGTTAGG GCAGAGGTAT CATGAGTTCC AGGCCAGCCT GGGCTACATA GTTATATTTA
  TACTCAAGCA AAAATAGGTA AAACACACAC ACACACACAC ACACACACAC TAGAAAACAC
  AGAAAACCCT GACCTATATT TTTCATGAGA CAAAGTGTGT CTCAGTTGAA TTATAATGAC
  CTAACTAAAG TATGAACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360817	MGP_WTSI_12_27128714	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	A	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240904746					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360817	MGP_WTSI_12_27128714	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26493848 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	273 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	96 bp downstream
Tssr112999	transcription start site region 112999	31 bp downstream
Tssr113000	transcription start site region 113000	63 bp upstream
Tssr113001	transcription start site region 113001	537 bp upstream
Tssr113002	transcription start site region 113002	561 bp upstream
Tssr113003	transcription start site region 113003	636 bp upstream
Tssr113004	transcription start site region 113004	696 bp upstream
Tssr113005	transcription start site region 113005	722 bp upstream
Tssr113006	transcription start site region 113006	1085 bp upstream
Tssr113007	transcription start site region 113007	1169 bp upstream
Tssr113008	transcription start site region 113008	1337 bp upstream
Tssr113009	transcription start site region 113009	1355 bp upstream
Tssr113010	transcription start site region 113010	1505 bp upstream
Tssr115902	transcription start site region 115902	979 bp upstream
Tssr115903	transcription start site region 115903	649 bp upstream
Tssr115904	transcription start site region 115904	625 bp upstream
Tssr115905	transcription start site region 115905	327 bp upstream
Tssr115906	transcription start site region 115906	207 bp upstream
Tssr115907	transcription start site region 115907	148 bp upstream
Tssr115908	transcription start site region 115908	104 bp upstream
Tssr115909	transcription start site region 115909	20 bp upstream
Tssr115910	transcription start site region 115910	23 bp downstream
Tssr115911	transcription start site region 115911	73 bp downstream
Tssr115912	transcription start site region 115912	87 bp downstream
Tssr115913	transcription start site region 115913	122 bp downstream
Tssr115914	transcription start site region 115914	174 bp downstream
Tssr115915	transcription start site region 115915	203 bp downstream
Tssr115916	transcription start site region 115916	260 bp downstream
Tssr115917	transcription start site region 115917	306 bp downstream
Tssr115918	transcription start site region 115918	325 bp downstream
Tssr115919	transcription start site region 115919	352 bp downstream
Tssr115920	transcription start site region 115920	379 bp downstream
Tssr115921	transcription start site region 115921	684 bp downstream
Tssr115922	transcription start site region 115922	780 bp downstream
Tssr115923	transcription start site region 115923	863 bp downstream
Tssr115924	transcription start site region 115924	934 bp downstream
Tssr115925	transcription start site region 115925	949 bp downstream
Tssr115926	transcription start site region 115926	1298 bp downstream
Tssr115927	transcription start site region 115927	1342 bp downstream