rs240912361 SNP Detail

Summary

• ID
  rs240912361
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:8758140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAGACA GAACCCCGAG
  AATTAGATGG TTATCAGCCA TCAAATGGAC TTAGGAGATA CCTATAGAAT ATTCCACACA
  AACACCAAAG GGCCTTCTAC TCAGCAGCAC AGGGACCGGT CTCCAAAACA GAGCACATCC
  TGGGATACAA AGCAAAGCTC TAATCTCAGG AAGATTAAAA TGACAGCGAG CATCCTCTCT
  S
  ATCATAACGC ACCACAACTT CAAACTGTCA GCAGACAGAT CTCCAGTAAG TCCACAAACT
  CCTGGAGATT AAGCAACACA TGACTGAATG ATGAATGGGT CAAAGAAGAA ATCCCAAAGA
  GAAACAGAAC ATTTCCGGGA ACTGGAGGAA AACACAACAC GAAACCCATC TGAGATATAG
  TGTGCAAGTA GTCCTAGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403018286	MGP_WTSI_X_8469027	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240912361					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403018286	MGP_WTSI_X_8469027	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:8758140 () rs orientation: forward

Symbol	Name	Function Class
B630019K06Rik	RIKEN cDNA B630019K06 gene	481 bp upstream
Cpgi22597	CpG island 22597	477 bp proximal
Gm54079	predicted gene, 54079	within coordinates
Rr689805	regulatory region 689805	within coordinates
Rr689806	regulatory region 689806	1041 bp proximal
Rr689807	regulatory region 689807	1704 bp proximal
Tssr160504	transcription start site region 160504	453 bp upstream
Tssr160505	transcription start site region 160505	475 bp upstream
Tssr160506	transcription start site region 160506	542 bp upstream
Tssr160507	transcription start site region 160507	1120 bp upstream
Tssr162869	transcription start site region 162869	1011 bp downstream
Tssr162870	transcription start site region 162870	1037 bp downstream