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rs240920255 SNP Detail
Summary
  • ID
    rs240920255
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:93352748 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGAGACGTC AGGATCGGCG
GCCTCTGCAA GACGAAGAGG AAGAGAAGAG AGAGCTGGAG CAGGAGAGGA GGCGTCGACA
GCAGCGCGAC CGTCAGATCC TAGAGGAAGA GCAGTTTCAG CGAGAGCACC AACGGGAAGC
CAGAAGACGA GATGAGACGT TCCAGGAGGA AGAACAGCTC CAGGGAGAAT CGAGAAGACG
R
CAACAGGAGA GAGAGGGCAA GTTCCTTGAG GAGGAAAGGC AGCTGCGGAC AGAACGGGAA
GAGCAGAGGC GGCGTCAAGA ACAAGAGAGA GAATTCCAAG AGGAGGAGGA GCACCTCCAA
GAACGCGAGA AAGAACTTCG GCAGGAATGC GACAGAAAAT CTCGTGAACA AGAGCGCCGC
CAGCAGCGTG AGGAAGAGCA                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876335 MGP_WTSI_3_93249363 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240920255 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876335 MGP_WTSI_3_93249363 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93352748 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 647 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr961 transcription start site region 961 1435 bp downstream
Tssr962 transcription start site region 962 315 bp downstream
Tssr963 transcription start site region 963 279 bp downstream
Tssr964 transcription start site region 964 180 bp downstream
Tssr30347 transcription start site region 30347 1968 bp downstream
Tssr30348 transcription start site region 30348 1948 bp downstream
Tssr30349 transcription start site region 30349 1936 bp downstream
Tssr30350 transcription start site region 30350 1892 bp downstream
Tssr30351 transcription start site region 30351 1868 bp downstream
Tssr30352 transcription start site region 30352 1818 bp downstream
Tssr30353 transcription start site region 30353 1799 bp downstream
Tssr30354 transcription start site region 30354 1784 bp downstream
Tssr30355 transcription start site region 30355 1765 bp downstream
Tssr30356 transcription start site region 30356 1711 bp downstream
Tssr30357 transcription start site region 30357 1656 bp downstream
Tssr30358 transcription start site region 30358 1538 bp downstream
Tssr30359 transcription start site region 30359 1512 bp downstream
Tssr30360 transcription start site region 30360 1482 bp downstream
Tssr30361 transcription start site region 30361 1157 bp downstream
Tssr30362 transcription start site region 30362 1141 bp downstream
Tssr30363 transcription start site region 30363 999 bp downstream
Tssr30364 transcription start site region 30364 927 bp downstream
Tssr30365 transcription start site region 30365 892 bp downstream
Tssr30366 transcription start site region 30366 839 bp downstream
Tssr30367 transcription start site region 30367 800 bp downstream
Tssr30368 transcription start site region 30368 776 bp downstream
Tssr30369 transcription start site region 30369 772 bp downstream
Tssr30370 transcription start site region 30370 763 bp downstream
Tssr30371 transcription start site region 30371 736 bp downstream
Tssr30372 transcription start site region 30372 726 bp downstream
Tssr30373 transcription start site region 30373 673 bp downstream
Tssr30374 transcription start site region 30374 659 bp downstream
Tssr30375 transcription start site region 30375 646 bp downstream
Tssr30376 transcription start site region 30376 610 bp downstream
Tssr30377 transcription start site region 30377 584 bp downstream
Tssr30378 transcription start site region 30378 562 bp downstream
Tssr30379 transcription start site region 30379 545 bp downstream
Tssr30380 transcription start site region 30380 466 bp downstream
Tssr30381 transcription start site region 30381 449 bp downstream
Tssr30382 transcription start site region 30382 394 bp downstream
Tssr30383 transcription start site region 30383 383 bp downstream
Tssr30384 transcription start site region 30384 374 bp downstream
Tssr30385 transcription start site region 30385 349 bp downstream
Tssr30386 transcription start site region 30386 327 bp downstream
Tssr30387 transcription start site region 30387 233 bp downstream
Tssr30388 transcription start site region 30388 214 bp downstream
Tssr30389 transcription start site region 30389 192 bp downstream
Tssr30390 transcription start site region 30390 121 bp downstream
Tssr30391 transcription start site region 30391 111 bp downstream
Tssr30392 transcription start site region 30392 93 bp downstream
Tssr30393 transcription start site region 30393 82 bp downstream
Tssr30394 transcription start site region 30394 56 bp downstream
Tssr30395 transcription start site region 30395 29 bp downstream
Tssr30396 transcription start site region 30396 11 bp upstream
Tssr30397 transcription start site region 30397 28 bp upstream
Tssr30398 transcription start site region 30398 103 bp upstream
Tssr30399 transcription start site region 30399 150 bp upstream
Tssr30400 transcription start site region 30400 635 bp upstream
Tssr30401 transcription start site region 30401 655 bp upstream
Tssr30402 transcription start site region 30402 754 bp upstream
Tssr30403 transcription start site region 30403 794 bp upstream
Tssr30404 transcription start site region 30404 1932 bp upstream
Tssr34352 transcription start site region 34352 1557 bp upstream
Tssr34353 transcription start site region 34353 1551 bp upstream
Tssr34354 transcription start site region 34354 1500 bp upstream
Tssr34355 transcription start site region 34355 1403 bp upstream
Tssr34356 transcription start site region 34356 722 bp upstream
Tssr34357 transcription start site region 34357 657 bp upstream
Tssr34358 transcription start site region 34358 598 bp upstream
Tssr34359 transcription start site region 34359 523 bp upstream
Tssr34360 transcription start site region 34360 478 bp upstream
Tssr34361 transcription start site region 34361 421 bp upstream
Tssr34362 transcription start site region 34362 408 bp upstream
Tssr34363 transcription start site region 34363 383 bp upstream
Tssr34364 transcription start site region 34364 368 bp upstream
Tssr34365 transcription start site region 34365 342 bp upstream
Tssr34366 transcription start site region 34366 274 bp upstream
Tssr34367 transcription start site region 34367 109 bp upstream
Tssr34368 transcription start site region 34368 79 bp upstream
Tssr34369 transcription start site region 34369 53 bp upstream
Tssr34370 transcription start site region 34370 27 bp upstream
Tssr34371 transcription start site region 34371 4 bp downstream
Tssr34372 transcription start site region 34372 767 bp downstream
Tssr34373 transcription start site region 34373 1935 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory