rs240923307 SNP Detail

Summary

• ID
  rs240923307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135935217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGCTCCCC AGAACGCGAA CTGAAAGCCT
  TTAAAGCCCG GAAACCCAGC CAACTATGAA TGCAATCTGA GGTAGGTAAT CTCTGCGTGT
  GAAGTGATTA TGTGTAAAAA CAGTGGATTA GTGTGTCCGT GCAGCTATGT CTCCTGGGAT
  Y
  AGCGGGACCT AGCCTCTTAC CCCGCCTTGG GACACAGAGC GGTGACCTCC CTAATGCAAT
  GCAAGACCAC CAGCACTCGC GCGTGGAGCT CAGTAACCCC GTACATTCTG CTGTACGTCT
  TCACCCGGTT TTCCGCAGCG ACCTAAGCCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319994323	CHEV_1_137904056	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240923307					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135935217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	within coordinates
Igfn1	immunoglobulin-like and fibronectin type III domain containing 1	1137 bp upstream
Rr19440	regulatory region 19440	1984 bp proximal
Rr28609	regulatory region 28609	within coordinates
Rr372097	regulatory region 372097	1018 bp upstream
Tmem9	transmembrane protein 9	740 bp upstream