rs240924836 SNP Detail

Summary

• ID
  rs240924836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124606961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCAACTA ATGGGCCCTT
  GGGTTATATA GAGATTTTGT GAATTGTGAA TAACAGGAAC ACAGGGTCGG TGTTTTCCCT
  TCTCTGCCTA GAGTAGGAAT GGAGTAGAGT CCCTTTTCTT TTTTCTTTTC TTTTTTGTTT
  TTTGGTTTTT TGAGACAGGG TTTCTCTGTA TATCCCTGGC TGTCCTGGAA CTCACTGCTG
  R
  GATTAAAGGC GTGCACCACG ACCACCTGGC CAGAGTCCCT TGTGTTGATG CTGAAACCCA
  GTGCCTTGGA GTGTGTGTGT GTGTGTGTGT GTGTGTGTAA GTGTATGTGT ATGTATGTTT
  GTGTGAATGT GTGTGTATAT ATGTGTGTGT GTATATATGT ATGTGTGTGT ATGTGTGTAT
  ATGTGTGTGT GAATGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321294515	CHEV_4_124390412	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240924836					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124606961 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14778	CpG island 14778	1362 bp proximal
Rr367691	regulatory region 367691	1387 bp upstream
Rr599338	regulatory region 599338	1809 bp distal
Rr599340	regulatory region 599340	132 bp distal
Rr599341	regulatory region 599341	1013 bp proximal
Rr599342	regulatory region 599342	1154 bp proximal
Rr599343	regulatory region 599343	1288 bp proximal
Sf3a3	splicing factor 3a, subunit 3	Intron
Tssr38902	transcription start site region 38902	1641 bp upstream