rs240929494 SNP Detail

Summary

• ID
  rs240929494
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92423829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGACTAA AAGTGTAAAA
  ACCAGAGGAC AAATGACTTT GCATAGACAT ACTAATCAAA ACCCAAAGCA GTGGAGGTAG
  CTCCCAGGAG ACCAGGAATG GCTCCTCTAC ATCTTCGGAA GTAATTTTCC ATGTGCCTGG
  CAGGGCGATC TTGTTAAAGC ACAGCCTCAG GTTGCCCAAG CTGGGCTTGG ACTCCGTCGG
  R
  TTTACAAGCT TCATTACTGG AAAGAGTCTA TGGCTCTCCT GGCACCAGCA GCGGCAGAGA
  TGTTCACCGG ACAATGAAAA GTTTCTGTTT ACAGACTAAA ATCAAAGCAT GGCCTTCCTT
  GACACGGTGA TGGCGAAGTT CAGAAGGAAC AGCTGGGAGT GTGACAAGCG CCTACTCAGC
  CAAGCAGACT GAAGCCCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074150	CHEV_9_92436614	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240929494					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92423829 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	81 bp proximal
Gm37545	predicted gene, 37545	1693 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	447 bp upstream
Rr684632	regulatory region 684632	within coordinates
Rr684633	regulatory region 684633	1142 bp proximal
Rr684634	regulatory region 684634	1269 bp proximal
Tssr86520	transcription start site region 86520	479 bp upstream
Tssr86521	transcription start site region 86521	654 bp upstream