rs240940618 SNP Detail

Summary

• ID
  rs240940618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172196119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGAGCTC TCGTCCCTCC
  CATTCCTCCT TTCAGCAACC TGTGAACTTC TTTACTCTTT CTTCTCTGCT ACACCTCTTC
  CCCAAATCAC AGAGCTCATT TCACTGCATT GCATGTATTG CAATTATGTG TCTAATTCAC
  ATGGGTCTGC CGGGGTGGGG GTGGGGGTGG GTGGGGGGGT GTCTTAGCAG GAATGATGTT
  R
  TTTTCATGTT TGACTTATAG GACCTCACGC TGTCCCGGGC ATTTAACAAG GGCTCTGCAA
  ATATTTGCTA AGATCAATGC CATCAAAAGG AAGGTTAGAG GCTGGCTAGA TGACACTCAC
  GCAGCAAGGA AAGGCATTTG CCACCAGGCT TGACCACCTG TGTTCAATTC CCAGGGCCCA
  CATGGCAGGA CAAAACAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352404588	MGP_WTSI_1_174298683	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	G	A	A	G	G	A	G	G	G	G	G	A	G	G	A	G	G	G	G	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240940618					SNP	A	A	A	A	A	G	A	A	G	G	A	G	G	G	G	G	A	G	G	A	G	G	G	G	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352404588	MGP_WTSI_1_174298683	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172196119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	377 bp proximal
Cpgi1046	CpG island 1046	1232 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	416 bp proximal
Tssr10190	transcription start site region 10190	1921 bp upstream