rs240940765 SNP Detail

Summary

• ID
  rs240940765
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113616402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCATATT TTCCATTCTT
  ATTATTTTGA GACAGGGTCA CCCAGTGTAG CCCTGGTACT TGCTTTGTAG ATCAGGCTGG
  CCTGGAACTA ACAGAGCTCT ACCTGCCTCT CCTGCTGGAA TACTGAGTTA AAGGTGTAGT
  CCACCATTCC TGGCTAGTCA TTTATTTTTC TGCAGTGAGG GAACTTTGAT CCTAGGGCCT
  T
  GTGCCTGTTA GAAAAGTCAC ACTACCACTG AGCCATAGTC CAGGTGACGT TCTTGGACTT
  TTGAGACCTG TTTTTCGTTT GTTTGTTTGT TTGTTGTTGT GTTTTTTAAT GTAGCCCATG
  TTGCCTTGGA ATTTGTCATT GTCCTGTCTC AGCCTCCTAA GTGTGGGATT ATAAATTTGA
  ATCTCTTGTA TTTGTGGGGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911256	CHEV_6_113589435	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240940765					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113616402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17852	CpG island 17852	671 bp distal
Gm43964	predicted gene, 43964	1121 bp downstream
Irak2	interleukin-1 receptor-associated kinase 2	Intron
Rr399834	regulatory region 399834	864 bp downstream
Rr636556	regulatory region 636556	903 bp distal
Rr636557	regulatory region 636557	1051 bp distal
Rr636558	regulatory region 636558	985 bp distal
Rr636559	regulatory region 636559	within coordinates
Tssr58237	transcription start site region 58237	897 bp downstream
Tssr62463	transcription start site region 62463	64 bp upstream