rs240947526 SNP Detail

Summary

• ID
  rs240947526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77355871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGGCATTT AGTCACCCTC TCTCCCAGAC
  TATGTGCTTT GGGCCAATGC CAACCCCTGC AGAGTCTTCA GAGCTCCCAC AACTTACTCA
  TGAAGACAAA AAGAAAGACG AGTGCCAGCC CCTGGTAAGG GACACTCAGC ACCAAGACTG
  Y
  GTGCTGCCTA TGACTCCAAG GTGAAACCAA GGGAGAGGTC TGCCCCAGGG GCTAAGCCAC
  TGCCGTCAGA GTCACTCACT CAGACCTCTC TCTCCAGGGG CTTGCCAAAG GTCCTCCAAC
  TTGGGGGACA GGTTCAAGCA CATCCTCCTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755239	CHEV_11_77278547	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240947526					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77355871 () rs orientation: forward

Symbol	Name	Function Class
Coro6	coronin 6	within coordinates
Cpgi3305	CpG island 3305	1824 bp distal
Cpgi3306	CpG island 3306	1890 bp proximal
Rr247229	regulatory region 247229	1070 bp distal
Rr247230	regulatory region 247230	1929 bp proximal