rs240954405 SNP Detail

Summary

• ID
  rs240954405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:63568705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGCATA CAGAAGCCTT
  TTCCTCATAG GGCTAGTTCT GCTGACAGAG CTCTGTGAGG ACACTTTCTG ATTCCTCGAG
  AGTGGCCACA TCCCAACAGA GCTCACTCCT CAAGCCCTTA CATCCTCCTA CCCGTTGTGT
  GCTGTCACAG GTCCAGGGGA CAGGGACCAA GCTCCCACTC TTGCCTGCCT AATAGCACAG
  Y
  CTATTCCTAT TGCAGCCCCA CCCCACCCCA CCCCCCACCC CGCCAACCCT GAACCCCAGG
  ATGCATCTTT CCTTGGATAA ACCTTGGTGT TTATACAGAA CCATCGTGGG GTCTGGCCAG
  CCCATAGTGG GTGCTCTGGC TGAACTCCCA CTCTCCTCCT TTAGAACAAG AAGGGAGGAG
  CATACATATC CAACCAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322233697	CHEV_7_71063843	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240954405					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:63568705 () rs orientation: forward

Symbol	Name	Function Class
E030018B13Rik	RIKEN cDNA E030018B13 gene	Intron
Gm53391	predicted gene, 53391	within coordinates
Klf13	Kruppel-like transcription factor 13	Intron
Rr647716	regulatory region 647716	695 bp distal
Tssr66989	transcription start site region 66989	1709 bp downstream
Tssr72768	transcription start site region 72768	14 bp downstream