rs240959404 SNP Detail

Summary

• ID
  rs240959404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:41386327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATATTACC TTATAACAAG
  TTTTTTTTTT TTTAAGAAAA TATACAACCT TGACTGAAAC CCAAACCAAG CTGTTTGTAT
  TTTATTAGAA TATGATTGTT AAGTATTTTT CAGTTGTAAG TGTTGCAGCA GGGTTTCACA
  GCTGTAAACT ATGAAGCAAG GACTGAAGAG ATAATTCAGA TAGTCCAGTA GCAATGGTTT
  Y
  CCTTCTCTTT TGTTACGTGA AGAAGCACTA ATCTCACTGA TAAGATAATG TTATCAAAAG
  TAAGATTATC AAAGAGAACT GAAACTTTTC CAAAGGAAAC CAAGATCCTC TCTGTTATAT
  TTTCCTGACT CATAAAAGAA TCTTTTGAAA TCAGAATAGT CTAAACAAAT TTGCTTGGCA
  AGAATGTCCA AATTCATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320246534	CHEV_2_41351835	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240959404					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41386327 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Mit371	DNA segment, Chr 2, Massachusetts Institute of Technology 371			1009 bp distal
Gm74545	predicted gene, 74545			within coordinates
Lrp1b	low density lipoprotein-related protein 1B			Intron
				Noncoding-Transcript-Variant