rs240967030 SNP Detail

Summary

• ID
  rs240967030
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96437533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCTCCC GTATCTCATT
  TATTTTAGTG TCTAAAATCT AGAGTGGATT TCAATGCATC AATAAACCGT CCTCATTAGG
  ATAAGGAAGA ACTGCCTTCG ACACTCTTTC AAGGCTGGGT TAGGGAAACG CTTAGGCTAT
  CAACAGGGCA CAGTGACTCC TTCTGGAAGA AAGAAAAAAT AAAATTGTTT TAACAGAAAT
  K
  TTAAAACCTG CAATAACGAG TTATTTATTC TACATGATTG TATTCTAATT AGAGGAAGAG
  ATTGGACAGA TAGATCTGTA AAGAACTGAA GGTGAATTTA CAGCTTATTT TACCCAGGAC
  CGTCAGGAGG TCAGAGAAAG TTCTTCATGT CTTTGCTGAG TGAGAAACAA GTTAGAAACC
  TAAGCTCTGC AACACTGTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384371728	MGP_WTSI_11_96408021	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240967030					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384371728	MGP_WTSI_11_96408021	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96437533 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	within coordinates
Rr238061	regulatory region 238061	1668 bp proximal
Rr252639	regulatory region 252639	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	1984 bp downstream
Tssr104544	transcription start site region 104544	1312 bp downstream
Tssr104545	transcription start site region 104545	1274 bp downstream
Tssr104546	transcription start site region 104546	1258 bp downstream
Tssr104547	transcription start site region 104547	1226 bp downstream
Tssr104548	transcription start site region 104548	1126 bp downstream
Tssr104549	transcription start site region 104549	1109 bp downstream
Tssr104550	transcription start site region 104550	1058 bp downstream
Tssr104551	transcription start site region 104551	1018 bp downstream
Tssr104552	transcription start site region 104552	1010 bp downstream
Tssr104553	transcription start site region 104553	320 bp upstream