rs240968571 SNP Detail

Summary

• ID
  rs240968571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57171434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTGGGG CTTTCCAAAT
  CACATTGCAA ATTGGGACAG AAGCCCAGGT TGCCTGGGTT TTGTATCTTA CTAACATGCT
  TTAACACTAG AAAGGTGCAT CTGTGCCCTG CCAGCTCTGG GTCATGCCAA ATCTGACAGG
  CTCAGCCTTC TCTCAAGGAG ATATTGTTTC CTACTATCAC ACATACTAAC TCTGCCCTCT
  Y
  CTCCCTTGTG CGTAGCATCT TCTTCCACTC CTGATGTCAG GAGTGACTTG GGAGGAAGAC
  AGTGAGTGCC CTTGGCTCCT GTGGTCTAGA ACTCTCAGGC TGTAGACCCA AGGAGGACCC
  CATTATGTCA TGATTAGCCT GCAAGACCCT AGGGCCCAGC TAAGACTACA GCCCCATTAT
  TTTGTCTCAA TTCATTAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377685778	MGP_WTSI_9_57111958	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240968571					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377685778	MGP_WTSI_9_57111958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57171434 () rs orientation: forward

Symbol	Name	Function Class
1700017B05Rik	RIKEN cDNA 1700017B05 gene	1539 bp upstream
Cpgi21813	CpG island 21813	1249 bp distal
Gm68485	predicted gene, 68485	1113 bp downstream
Gm68491	predicted gene, 68491	293 bp upstream
Rr679624	regulatory region 679624	1049 bp distal
Rr679625	regulatory region 679625	993 bp proximal
Tssr89770	transcription start site region 89770	1571 bp upstream
Tssr89771	transcription start site region 89771	1542 bp upstream
Tssr89772	transcription start site region 89772	1354 bp upstream
Tssr89773	transcription start site region 89773	1638 bp downstream
Tssr89774	transcription start site region 89774	1656 bp downstream