rs240968989 SNP Detail

Summary

• ID
  rs240968989
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130266995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGGGCA CTATTAATGA
  GGAACCCGAG GCAGTGGCAA CTCACCGGGG TTGGAGTGCC CTTAGCTGTG GGTCTTTCTC
  AAGGCTAAAA CTAGTAACGT GATTACAATG GTTACCGTCT CGTTGGCTTT ATTTCTTTTT
  AAGATATAAA GTACAAACTG CTTGTGGAGC GCTCATCAAT TGGTCAGCCT ACATTTGTCA
  S
  TCTCTGAGTG GTTTCCAACT TAACCTCAAT CATCCTCAAT CCGTGGGTGT ACCAGCTTCA
  CAGAATTAAT TGCAGGACCT CATCACACCA GGCAATTCCA TGGCTTTGTG TTTGCACAGT
  TCTATAGTCG CTTCTATGGG CATTGCTATT TTCCTCTTTA TCACCCTGAA GAATGTTGCT
  CATCTTTCAG GACCTGCTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355662279	MGP_WTSI_2_130250811	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240968989					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355662279	MGP_WTSI_2_130250811	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130266995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12264	CpG island 12264	150 bp distal
Pced1a	PC-esterase domain containing 1A	303 bp upstream
Rr565055	regulatory region 565055	946 bp distal
Rr565056	regulatory region 565056	700 bp distal
Rr565057	regulatory region 565057	within coordinates
Tssr20210	transcription start site region 20210	682 bp downstream
Tssr26294	transcription start site region 26294	1263 bp upstream
Tssr26295	transcription start site region 26295	782 bp upstream
Tssr26296	transcription start site region 26296	769 bp upstream
Tssr26297	transcription start site region 26297	347 bp upstream
Tssr26298	transcription start site region 26298	285 bp upstream
Vps16	VSP16 CORVET/HOPS core subunit	within coordinates