rs240969642 SNP Detail

Summary

• ID
  rs240969642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74499073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACCTCTG AGCGCACAGG
  CTCTTCGTCG TCGTCGTCAT CCTCGGCTGT GATCGCCACT CGCCCCGAGG CTCCTGTGGC
  CAAAGAGTGT CCCGCGCCAG CGGCCGCCGC GACCGCTGCA GCACCGCCGG GCGCTCCCGC
  GCTGGGCTAT GGCTACCACT TCGGCAACGG TTACTACAGC TGCCGCATGT CGCACGGCGT
  R
  GGCTTACAGC AGAACGCTCT CAAGTCGTCC CCGCACGCTT CTCTCGGAGG TTTCCCGGTG
  GAGAAGTACA TGGACGTGTC GGGCCTGGCG AGCAGCAGCG TACCGACCAA CGAGGTGCCC
  GCAAGAGCCA AGGAAGTGTC CTTCTACCAG GGCTACACAA GTCCCTATCA GCACGTGCCT
  GGCTACATCG ACATGGTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348108	CHEV_2_74506786	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240969642					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74499073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11788	CpG island 11788	1276 bp distal
Cpgi11789	CpG island 11789	within coordinates
Gm31790	predicted gene, 31790	1049 bp downstream
Hoxd13	homeobox D13	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559337	regulatory region 559337	1819 bp distal
Rr559338	regulatory region 559338	409 bp distal
Rr559339	regulatory region 559339	1891 bp proximal
Tssr18389	transcription start site region 18389	1456 bp downstream
Tssr18390	transcription start site region 18390	500 bp downstream