rs240971743 SNP Detail

Summary

• ID
  rs240971743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130553875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGAGAATG ACCCAGGGCA ATAGGACAGC
  ATCCACACGG GAACCTTGAG GTAACCGTGG TTGGTTGAAA GAGGTGAAAT GGTGTATATG
  ACtgtcttag tcagggtttc tattcctgca caaaacatca tgaccaagaa gcaagctggg
  R
  aggaaagggt ttattcagct tacatttcca cattgctgtt catcatcaaa ggaagtcaga
  actggaactc acacaggtca ggaagcagga gctgatgcag aggccatgga gggatgttac
  ttactggctt gcttcccctg gcttgctcag                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318883	CHEV_4_130382479	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240971743					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130553875 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	251 bp upstream
Sdc3	syndecan 3	246 bp downstream
Tssr39293	transcription start site region 39293	686 bp downstream
Tssr39294	transcription start site region 39294	526 bp downstream
Tssr39295	transcription start site region 39295	361 bp downstream
Tssr39296	transcription start site region 39296	333 bp downstream