rs240973790 SNP Detail

Summary

• ID
  rs240973790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110679558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTCCCTC AGAACAGACT
  TTGGCACTTA CCCTCTTACT TTCCTGAAGA TTGCATCATG TCGTTCTTTT TCATTTGCGG
  AGTTGTTTGC TGCGGAGTTG TCATCTCGTC TAGTGCTTCG TGCAGGAATC CATTTCTGAG
  CGTTTTGCCC TGGGGTTTTC CCCAGGAACT CGCTAGTTTA ATAAAACATT GATGAAGTGG
  Y
  TTACAATTAT GAAAAAACTT GAACACAGCA TCCACTCACA ACAAATACCA TAAAACCCTA
  AAACCGCTAA ACAGAGGGGA AAAGGAGCCA CCAAACCAAA GGCTTTACTT CCCCCCCCAC
  AACAAAACAA TCCTAAAAAT TTTTTCAAAC AGCATCAGAA TTGTCCAGAT GGTATCTTAA
  AACAGACTCG AAGGCCCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322401265	CHEV_7_118223865	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240973790					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110679558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	1620 bp proximal
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Rr381309	regulatory region 381309	749 bp upstream
Tssr2372	transcription start site region 2372	29 bp upstream
Tssr68538	transcription start site region 68538	158 bp downstream
Tssr74292	transcription start site region 74292	1796 bp upstream
Tssr74293	transcription start site region 74293	1783 bp upstream
Tssr74294	transcription start site region 74294	1014 bp upstream
Tssr74295	transcription start site region 74295	38 bp upstream
Tssr74296	transcription start site region 74296	580 bp downstream
Tssr74297	transcription start site region 74297	1245 bp downstream
Tssr74298	transcription start site region 74298	1675 bp downstream
Tssr74299	transcription start site region 74299	1864 bp downstream