rs240977730 SNP Detail

Summary

• ID
  rs240977730
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:22199469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACAGCA CTTAGGTGGC
  CATAAGCAAA TACGATCCTT CATCTTAGAA TTGTGATATG GCCTTCAGTG TGTTGCTAGG
  AAATCCTTTC GTTTAGGTTA AACTACCTGT ACACAGCTGT GTCTATCTGC TTTTTCCCCC
  CCCGACAGAC AGGGTCTCTC TGTATAGCCC TGGCTGTACT GGAACTCACT TTGTAGACCA
  S
  GCTGGCCTCG AACTCAGAAA TCTGCCTGCC TCTGCTTCCT GGCTCTCTGT CTGCTTTTTA
  CTGAAGATGA ACTTGCTCTT GATGCCATAG AAACAGTTTT ATACTTAACT ATTTAAGTGA
  TATTTACCTT AAGGATCTAT AGTCTAAAGA AAAGTTAAAT AAAAAACTAA AGGGTGTTGA
  GGAGAGATAA CCAGTAGAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320684114	CHEV_3_22044227	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240977730					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22199469 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574213	regulatory region 574213			1592 bp distal
Rr574214	regulatory region 574214			1839 bp distal
Rr574215	regulatory region 574215			756 bp distal
Rr574216	regulatory region 574216			840 bp distal
Tbl1xr1	transducin (beta)-like 1X-linked receptor 1			Intron
				Noncoding-Transcript-Variant