rs240983989 SNP Detail

Summary

• ID
  rs240983989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135042425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGTCTCG TCTAGTCTCC
  GCCCCCCCTC GCCCCCCCCC CCCGCCCTGC CACGAGGGGT TGACTCTGTG CTAGTTCTTC
  AAGGAATCAT CTGCCCCCAG AATTCTTTTT TTTTTTTAAT TAAAGATTTA TTTATTATTA
  TATGTAAGTA CACTGTAGCT GTCTTCAGAC ACACCAGAAG AGGGAGTCAG ATCTTGTTAC
  R
  GATGGTTGTG AGCCACCATG TGGTTACTGG GATTTGAACT CTGGACCTTC GGAAGAGCAG
  TCGGGTGCTC TTACCCACTG AGCCATCTCT CCAGCCCGCC CCCAGAATTC TTATCCCACC
  TCAAGAGGAA AAAAACAAAA ACCCAAGGAA CCAGGCATGC TTACCATTTT ATTTTTTTTG
  TTTTGTTTTG TTTTGTTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824629	MGP_WTSI_5_135489441	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240983989					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824629	MGP_WTSI_5_135489441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135042425 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	1396 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	783 bp upstream
Gm73578	predicted gene, 73578	169 bp upstream
Rr622228	regulatory region 622228	within coordinates
Rr622229	regulatory region 622229	637 bp distal
Rr622230	regulatory region 622230	362 bp distal
Rr622231	regulatory region 622231	261 bp distal
Rr622232	regulatory region 622232	134 bp distal
Rr622233	regulatory region 622233	10 bp distal
Rr622234	regulatory region 622234	1446 bp proximal
Rr622235	regulatory region 622235	1820 bp proximal
Tssr1662	transcription start site region 1662	834 bp upstream
Tssr1663	transcription start site region 1663	401 bp upstream
Tssr1664	transcription start site region 1664	367 bp upstream
Tssr53717	transcription start site region 53717	810 bp upstream
Tssr53718	transcription start site region 53718	763 bp upstream
Tssr53719	transcription start site region 53719	748 bp upstream
Tssr53720	transcription start site region 53720	703 bp upstream
Tssr53721	transcription start site region 53721	446 bp upstream
Tssr53722	transcription start site region 53722	413 bp upstream