rs240994233 SNP Detail

Summary

• ID
  rs240994233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136194636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAGGCTG CAGAGTGAGA
  CGTGTGTACG TGAGTGTGTG TGTGCATGTG TGTGTGCACA TGTGTGTGTA CACACTCAAG
  TGTGTGTGAG TATGTGCATG AGTGTGTATG TGTGTGCTGT TTGTGTGTAA GAGTATTGCG
  TGTGTGTGCA CATGAGCGTG TGTGTGTGTG TGTGTACATG TGCGTATGTG TATGAGGGAA
  R
  AGAAGGAGGG AGAGAGAAAG AGAACACACA CTAGTGAAAT ATCTCAGTGG GTAAAGCTGC
  TTGCCACCAA TCCTGGGACC AGTGTTCTAT CCCTGGGGCC CACACGGTGG ATGGAGAGAA
  CTGACTCCTG AAAGCTGTCC TCCGATCCTA ACAGGGGTGC TGTGACATAA AGCAAAATCA
  ACATTGTCAT TTAAAGGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321699071	CHEV_5_136641652	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240994233					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136194636 () rs orientation: forward

Symbol	Name	Function Class
Orai2	ORAI calcium release-activated calcium modulator 2	within coordinates
Tssr53803	transcription start site region 53803	724 bp upstream
Tssr53804	transcription start site region 53804	682 bp upstream
Tssr53805	transcription start site region 53805	550 bp upstream
Tssr53806	transcription start site region 53806	529 bp upstream
Tssr53807	transcription start site region 53807	53 bp downstream
Tssr53808	transcription start site region 53808	313 bp downstream