rs240997131 SNP Detail

Summary

• ID
  rs240997131
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55252192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGAAACT CATGGAGCTC
  TGCTTGTCTC TTGACTAAAG AGATCTGGGA TTAAAGGCCA AAGCTACACT TTGGATTTCC
  CGGCTCAGGT CTGCTCTTCT GTTGCGCGAG GAAACTCCGA GCCAGGAGGA CCTTTCTAGC
  GCTGTATTGT GTAATGCAGA CGGAGAGTGG GAGTTATAAC TCCCACCTAA TCCTCCAGCC
  S
  GTGAGAGGCG AGGGAGTGGG CGTGTTGGAA GATACTGAGA AAAGATGACG GGGACAAAGG
  AAATATGCAC AGCCAGGGTT TTAACCACGT TCTGCGGTGG ACGAGTGGAG CAGTGAGAAA
  GGCACGCAGG TTGAGCCGGT TCCTCGCCTG TCGATTTTTC CCTCGAGAGG AATGCAGGGC
  GCAATGCGGC CTTTGCGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324641566	CHEV_14_55633572	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs240997131					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55252192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	within coordinates
Gm63342	predicted gene, 63342	1521 bp downstream
Gm63347	predicted gene, 63347	within coordinates
Ngdn	neuroguidin, EIF4E binding protein	719 bp upstream
Rr369830	regulatory region 369830	350 bp upstream
Rr369831	regulatory region 369831	569 bp upstream
Rr404108	regulatory region 404108	313 bp downstream
Rr492392	regulatory region 492392	229 bp proximal
Rr492393	regulatory region 492393	411 bp proximal
Rr492394	regulatory region 492394	730 bp proximal
Rr492395	regulatory region 492395	1056 bp proximal
Rr492396	regulatory region 492396	1423 bp proximal
Tssr125743	transcription start site region 125743	795 bp upstream