rs240998989 SNP Detail

Summary

• ID
  rs240998989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7461172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTAGCAT CCTGATAAGA
  CAAAGGGGAT CTCCGAGATA TCAGCAAGCC ATTCCCCCTT TTCCACTACT CTATGCCCCT
  ATAAGACCAC CCTTTACTAG TACTTTGCCT TCATCCTCCA CAGAGCAAAG CTAGGCCCCA
  AGCAACAGTG CACCTAAAGG ACTCACAGAG GGGCAGGCAA CAACTCAGTC CCGCCTCCAC
  Y
  CTCCCGGAGG CCAGCCTGCT CCATACCTTG AACACAAGCT CATCAGTCAC TGCAAATGTC
  CGGTCGAGCT TCCCAGAGAG AGAGTTGATT TCCTTCTGCA GTTCCTTTGT GTCCGACAAG
  ATCTGGTAGA AACCAGGGTA ACTATCAGTG CACATCTTGG GCAAGGTAGC TGATCAGTGA
  TAACACTCAC GTGCCTATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403003490	MGP_WTSI_X_7172059	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs240998989					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403003490	MGP_WTSI_X_7172059	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7461172 () rs orientation: forward

Symbol	Name	Function Class
Ccdc22	coiled-coil domain containing 22	within coordinates
Foxp3	forkhead box P3	within coordinates
Gm36995	predicted gene, 36995	within coordinates
Tssr160389	transcription start site region 160389	1854 bp downstream
Tssr160390	transcription start site region 160390	1761 bp downstream
Tssr160391	transcription start site region 160391	1697 bp downstream
Tssr160392	transcription start site region 160392	1681 bp downstream
Tssr160393	transcription start site region 160393	1473 bp downstream
Tssr160394	transcription start site region 160394	1422 bp downstream
Tssr162800	transcription start site region 162800	119 bp downstream
Tssr162801	transcription start site region 162801	277 bp downstream
Tssr162802	transcription start site region 162802	509 bp downstream