rs241009330 SNP Detail

Summary

• ID
  rs241009330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90400038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGGAGGG GCATAGTGTA
  CAAGCTCTGT TTTAAGTCTT TCAAGTGCTG GAGTTACAGG TCTGTGCCAC CATGACAGGA
  TTTAAAGTTA AGGGTTTTTT GTTTTGCTGA AATTTTTGAG GGGGGCTTGA AACCAGGGCC
  TTGTGATTGC TAGACAAATG TTCTGCTGAG CTATAGTCCT ACTGTACCTT CCCTCTACCC
  Y
  CACCTCACTT TTTGAGATAA GGTTTCACTA AATTGCCAGA TTGGACTTGA ATTTGCTTTG
  TAGTACACAC AGGCCTTGAC TATGTATGTG ATCCTCCTGC CTCAGGTTCA GGCTTATACC
  AGCTTTAGCT TCTAAAGTTG TTTTTGATTT GTTTTTCAGT TTTATTTTGT GTGTGTTCAT
  GTGTGTGTGG AAACCTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358833341	MGP_WTSI_3_90296653	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241009330					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358833341	MGP_WTSI_3_90296653	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90400038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13464	CpG island 13464	1549 bp distal
Rr397812	regulatory region 397812	1432 bp downstream
Rr580375	regulatory region 580375	1208 bp distal
Rr580376	regulatory region 580376	1672 bp distal
Rr580377	regulatory region 580377	1560 bp distal
Rr580378	regulatory region 580378	1236 bp distal
Rr580379	regulatory region 580379	1181 bp proximal
Snapin	SNAP-associated protein	1718 bp upstream
Tssr34232	transcription start site region 34232	1964 bp upstream
Tssr34233	transcription start site region 34233	1941 bp upstream
Tssr34234	transcription start site region 34234	1693 bp upstream