rs241021103 SNP Detail

Summary

• ID
  rs241021103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37400016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG CAGAACACGT GAGTGCAATC
  R
  GAGTTGCTAT AGAGGCTGAG TTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322907206	CHEV_9_37296305	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241021103					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37400016 () rs orientation: forward

Symbol	Name	Function Class
BB236558	expressed sequence BB236558	within coordinates
Cpgi21578	CpG island 21578	94 bp proximal
Gm69832	predicted gene, 69832	within coordinates
Msantd2	Myb/SANT-like DNA-binding domain containing 2	301 bp upstream
Rr676695	regulatory region 676695	within coordinates
Rr676696	regulatory region 676696	528 bp proximal
Rr676697	regulatory region 676697	887 bp proximal
Tssr2827	transcription start site region 2827	342 bp upstream
Tssr84392	transcription start site region 84392	50 bp upstream
Tssr84393	transcription start site region 84393	268 bp upstream
Tssr84394	transcription start site region 84394	303 bp upstream
Tssr84395	transcription start site region 84395	561 bp upstream
Tssr88840	transcription start site region 88840	1109 bp downstream