rs241027751 SNP Detail

Summary

• ID
  rs241027751
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30737903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGCCCAG TACCACTGAG
  CCACACCCCA GCTCCTCACT GGGGGATTCT AGGCAGGGGC TCTACCACTG AGCCACACCC
  CAGCCCCTCA CTGGAGGATT CTAGGCAGGG GCGCTACCAC TGAGCCACGC CCCCAGCCCC
  TCACTGGAGG ATTCTAGGCA GGGGCTGTAC CACTGAGCCA CGCCCCCAGC CCCTCACTGG
  R
  GGATTCTAGG CAGGGGCTGT ACCACTGAGC CACGCCCCCA GCCCCTCACT GGAGGATTCT
  AGGTAGGGGC TCTACCACTG AGCCATGCCT TCAGCATCAC TAATCATTAA CTGAAGAAAT
  TACAAGAAGT ACTCTAAATT ATATTATACT CCAAGAAAAA GTATAATTAT TATTTAGAAA
  AAAAAAATCT AAAGAGATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
ss370920933	MGP_WTSI_7_31823497	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	A	A	A	A	A	A	A	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
rs241027751					SNP	A	G	A	A	A	A	A	A	A	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370920933	MGP_WTSI_7_31823497	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30737903 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	1165 bp downstream
Mir7050	microRNA 7050	1780 bp downstream
Rr368303	regulatory region 368303	1992 bp upstream
Rr644981	regulatory region 644981	1479 bp distal
Rr644982	regulatory region 644982	1183 bp distal
Rr644983	regulatory region 644983	1866 bp proximal
Tssr65831	transcription start site region 65831	1470 bp downstream
Tssr65832	transcription start site region 65832	1061 bp downstream
Tssr65833	transcription start site region 65833	622 bp downstream
Tssr65834	transcription start site region 65834	591 bp downstream
Tssr71891	transcription start site region 71891	1979 bp upstream
Tssr71892	transcription start site region 71892	1384 bp upstream
Tssr71893	transcription start site region 71893	611 bp upstream
Tssr71894	transcription start site region 71894	588 bp upstream
Tssr71895	transcription start site region 71895	559 bp upstream
Tssr71896	transcription start site region 71896	529 bp upstream
Tssr71897	transcription start site region 71897	581 bp downstream
Tssr71898	transcription start site region 71898	1730 bp downstream