rs241039896 SNP Detail

Summary

• ID
  rs241039896
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64607566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGGACA TTTATAAAGA
  TCTGGCCACT CGGCCATGAT CCTATCATTC GTTGTCCCAA GAGAGACTGT ACGGTGAACT
  AGAAGGGCAA TGCGCTGTCT GAAATGGGCC CTTTACAAAG CAGGCACAAC CCAACACTTA
  CTACTTTCGG GCTCAAGGAT CCTGCTATTC TATCCCAGGA TCCCCGCCCC CCCCTCCCCC
  S
  TTACTGGTGC TTTGTGGTAA AAGTATAGGA GATGCAGAGG ACAGCTCCAT TCCTTGAATG
  CTTAGTGTTT TAAAAATTAA GGCAGAGAAG GATGCCTGTG ATCATTTGTG TGTAGGAATA
  AATGCACAGG AGAGACAGGG TTGCCTGGTT TGCTGCTGGG GAGTGCTGCT TTTTAGGAAC
  TGTGAGGACC CATCTGAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	PWK/PhJ	QSi3/Ianm	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388884012	MGP_WTSI_13_64561060	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	PWK/PhJ	QSi3/Ianm	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241039896					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388884012	MGP_WTSI_13_64561060	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64607566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5782	CpG island 5782	1880 bp distal
Cpgi5783	CpG island 5783	731 bp distal
Gm7712	predicted gene 7712	964 bp upstream
Gm31218	predicted gene, 31218	within coordinates
Rr481887	regulatory region 481887	1834 bp distal
Rr481888	regulatory region 481888	927 bp distal
Rr481889	regulatory region 481889	1132 bp proximal