rs241040238 SNP Detail

Summary

• ID
  rs241040238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80139721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTAACG CCACAGTTAC
  CCCCCGAGCA CAGCGGAGAA GGGTTGGGGC GGGCGAGGGC GTCAGTGAGA GGCGGTTTGG
  TGGCGCTGCG GTAGGATCAC GTGACCACAG TGGGAGGATA CGCGGTGTGC TGCGTCCCTG
  GCCGAGGCTA TAAAGGGCGG GTTTAGGGCG TGCCGCCGCC ATTTCTGCTT GCTGTCTGCC
  R
  GTTTAAGTTG TGTGCTCGGG TGTCCCTTTC CTCTTCCCCT CCCGCAGGGC TTGCGGCCAC
  CATGGCGTAT TAGAGGCAGC AGTGCCTGCG GCAGCGTTGG CCTTTGCAGC GGCGGCAGCA
  GCACCAGGCT CTGCAGCGGC AACCCCCACC GGCCTAAGCC ATGGCGTGAG TATGGGGCCG
  GCCGCGGAGG GCGGGGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394695417	MGP_WTSI_15_80085950	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241040238					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394695417	MGP_WTSI_15_80085950	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80139721 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	within coordinates
Cpgi7369	CpG island 7369	within coordinates
Gm56706	predicted gene, 56706	525 bp upstream
Rr505931	regulatory region 505931	536 bp distal
Rr505932	regulatory region 505932	533 bp distal
Rr505933	regulatory region 505933	326 bp distal
Tssr132199	transcription start site region 132199	339 bp downstream
Tssr132200	transcription start site region 132200	257 bp downstream
Tssr132201	transcription start site region 132201	199 bp downstream
Tssr132202	transcription start site region 132202	9 bp downstream
Tssr132203	transcription start site region 132203	497 bp upstream
Tssr132204	transcription start site region 132204	817 bp upstream
Tssr132205	transcription start site region 132205	1384 bp upstream
Tssr132206	transcription start site region 132206	1562 bp upstream
Tssr132207	transcription start site region 132207	1645 bp upstream
Tssr135431	transcription start site region 135431	520 bp upstream
Tssr135432	transcription start site region 135432	502 bp upstream
Tssr135433	transcription start site region 135433	325 bp downstream