rs241040361 SNP Detail

Summary

• ID
  rs241040361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36074169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGATATC TTTGTCTCTC
  TGTCTCTGTC TCTCTCTCTT TCCCTCTGTG TGTGTGCCAT GTGTGTGGGT GCCTGTAGAG
  GCCAGAAGGG AGCACCCAAT CCCTTGCAAC GATTCTCCCA GGAAGTCTTG GCACCTGACA
  TGATGTTTTG GGATTAATGA TCTCTGGTCC TCTGGAAAAG CACCAAGGGC TTTTTTTCTC
  Y
  TTCTTTTTGT TTGTTCCTTT GTTTTTGAGA CTCCCACTGT GTAACCCTGG CTGGCCAGAA
  ATTCACTTTG TAGACCAGGC TGGCCTTAAA CTCACAGAGA TCCCATCCTC CAGCCTCTGG
  CTTCCGAGTA GCTCCGTTGG TAGAGCGATT GCTGGCACGT CCGGGGCCTT GGGTTCTATC
  CTCAGCACCA CGAAAACACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584117	CHEV_18_36100770	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241040361					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36074169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9858	CpG island 9858	1140 bp distal
Gm56493	predicted gene, 56493	within coordinates
Rr536027	regulatory region 536027	1751 bp distal
Rr536028	regulatory region 536028	1459 bp distal
Rr536029	regulatory region 536029	1238 bp distal
Rr536030	regulatory region 536030	699 bp distal
Rr536031	regulatory region 536031	792 bp proximal
Rr536032	regulatory region 536032	821 bp proximal
Rr536033	regulatory region 536033	1293 bp proximal
Tssr150585	transcription start site region 150585	1253 bp upstream