rs241050585 SNP Detail

Summary

• ID
  rs241050585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:110369025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGCAGGC AGCCGTGGAG
  CCTCTGTCTG TTCCAGCTCC ATCATCACCT TCACCTCAGA GGAAGTGTTG ACTGCAGACT
  GGGGGAGTCC GCCTGTCCAG GTTGCAACTT GGAGGGACTT GGCTTGCTCT GAAGAGGCTG
  GTAGTACCTG GTCCTCTCTA GGTGGGCTGG TGTGAGACTC TAACCTTTCA GGCCTATCCA
  Y
  CCTTAGCCCA GCCTCAAACC TGAAATCCTG AATACAGGCG GACTGGCTCT CACCAGCATT
  GTGTTCTTTG AGATAAAAGG TTTGCTTTTC CTGTTCTTAC TCTTGCTGAG TCCCTCTTCA
  GATGGCCTCT GAGTCAATCC CAGATCTTGG CAGTATCTTG GGCAGGTGAA ATGTAGGCTT
  AGAATTAAGT TGGAATATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398783	CHEV_7_117913332	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241050585					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110369025 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ampd3	adenosine monophosphate deaminase 3			Intron
				Noncoding-Transcript-Variant
B430319F04Rik	RIKEN cDNA B430319F04 gene			473 bp upstream
Cpgi19579	CpG island 19579			585 bp distal
Rr653308	regulatory region 653308			1602 bp distal
Rr653309	regulatory region 653309			897 bp distal
Rr653310	regulatory region 653310			197 bp distal
Rr653311	regulatory region 653311			844 bp proximal
Tssr68503	transcription start site region 68503			1718 bp downstream
Tssr68504	transcription start site region 68504			1691 bp downstream
Tssr68505	transcription start site region 68505			1662 bp downstream
Tssr68506	transcription start site region 68506			1625 bp downstream
Tssr68507	transcription start site region 68507			1184 bp downstream
Tssr68508	transcription start site region 68508			971 bp downstream
Tssr68509	transcription start site region 68509			808 bp upstream
Tssr74265	transcription start site region 74265			453 bp upstream