rs241052927 SNP Detail

Summary

• ID
  rs241052927
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCATCCA GTTCTAGCAG
  ATCGTATACC CTCTTCTTAC TGTAGGCTCC AGGCATGCAC ATGATGTACA GATATACATA
  CAGGCAAAAC ACTCATACAC ATAAAATAAG ATAAGATAAA ATAAAATAAA ATAAGTGAAA
  AAAAAAACAG ACAACTGGGA ATACAATGAA AACACAGAGA TAAGCTCATT TAATAGCCTT
  K
  ACCCTCTTAT TACCATCATG TGTATTTTCT ATAAAGTTAT AAAATATGTG ATATGTGCTA
  AAGCAACTTT AGTACCAAAC ATGGCAACTG GTTGTAGATA ATTGTGTTTT CTATCTTCAT
  TCCTTACTTA TACAGAACTA AACCTAACAA CTAAACCACA GAACTAATCT TTGCTTATAA
  GATTCAAAAA TATTCATAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315490	MGP_WTSI_2_113872659	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241052927					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315490	MGP_WTSI_2_113872659	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877404 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	359 bp downstream
Rr562815	regulatory region 562815	1213 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	639 bp downstream
Tssr601	transcription start site region 601	649 bp downstream
Tssr19429	transcription start site region 19429	361 bp upstream
Tssr19430	transcription start site region 19430	456 bp upstream
Tssr19431	transcription start site region 19431	536 bp upstream
Tssr19432	transcription start site region 19432	632 bp upstream
Tssr19433	transcription start site region 19433	1198 bp upstream
Tssr19434	transcription start site region 19434	1251 bp upstream
Tssr25660	transcription start site region 25660	388 bp downstream
Tssr25661	transcription start site region 25661	405 bp downstream
Tssr25662	transcription start site region 25662	462 bp downstream
Tssr25663	transcription start site region 25663	525 bp downstream
Tssr25664	transcription start site region 25664	555 bp downstream
Tssr25665	transcription start site region 25665	663 bp downstream
Tssr25666	transcription start site region 25666	1230 bp downstream
Tssr25667	transcription start site region 25667	1257 bp downstream
Tssr25668	transcription start site region 25668	1293 bp downstream
Tssr25669	transcription start site region 25669	1322 bp downstream