rs241073560 SNP Detail

Summary

• ID
  rs241073560
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135961770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGTAAAAC AAAAAACATC TGTAGCTTAT TTAATTAGGA
  AAGGATAAGC ACCTGGCCTT TTGAAAAAAC AAAGAAAAAA AATCATTTAA AATTAAATAG
  C
  CTCTCTCTCT CTCTCTCTCC GGGTTTCATT TGTAAGGTTT AACAGGGAGG GGGCACTCCA
  GCACCCACTT TACACCAGAG ATGTATTTAA CAACCTTTG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321698186	CHEV_5_136408786	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241073560					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135961770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16773	CpG island 16773	1022 bp proximal
Gm40346	predicted gene, 40346	within coordinates
Gm57297	predicted gene, 57297	1765 bp upstream
Rr378682	regulatory region 378682	833 bp upstream
Rr622478	regulatory region 622478	203 bp distal
Rr622479	regulatory region 622479	39 bp proximal
Rr622480	regulatory region 622480	353 bp proximal
Rr622481	regulatory region 622481	1628 bp proximal
Rr622482	regulatory region 622482	1776 bp proximal
Tssr53779	transcription start site region 53779	784 bp downstream
Tssr53780	transcription start site region 53780	1641 bp downstream
Tssr53781	transcription start site region 53781	1674 bp downstream
Tssr53782	transcription start site region 53782	1703 bp downstream
Ywhag	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	within coordinates