rs241078251 SNP Detail

Summary

• ID
  rs241078251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35026575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tccagagtg ctgggattat aaataggtac
  caccacaata tgtttaggca atgttaagag atcaagttta aagagtttat gacaggtaaa
  cactttacca actgCATTCC TTGTGTCGTT GTCCGTCCTc cccccccccc gccgcccccc
  Y
  ccccAGTACT GGGATTGTAG GCAGCTCCGT CTGTCACTGA ACCACACCCC CAGTCCCTAA
  TTTACTTTTA TGACTTCTGC CTGCATACCT CTCTTTATCT CCATCATCAC CTTGAAATCT
  TTGGGGACTG GCCCAACTCC TGGCTTGCTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322899091	CHEV_9_34922864	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241078251					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35026575 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	1449 bp upstream
Cpgi21550	CpG island 21550	974 bp proximal
Gm57537	predicted gene, 57537	1921 bp downstream
Rr676432	regulatory region 676432	959 bp proximal
Rr676433	regulatory region 676433	1470 bp proximal
Rr676434	regulatory region 676434	1584 bp proximal
Rr676435	regulatory region 676435	1766 bp proximal
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates
Tssr84325	transcription start site region 84325	1461 bp upstream
Tssr84326	transcription start site region 84326	1651 bp upstream
Tssr88717	transcription start site region 88717	1481 bp downstream
Tssr88718	transcription start site region 88718	1525 bp downstream
Tssr88719	transcription start site region 88719	1696 bp downstream