rs241080742 SNP Detail

Summary

• ID
  rs241080742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79213048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGAAGAG CCTGCTTTGA
  TGTTGCCAGG TTCTCCCAAA CCAAATTGCA AATAAAAATA TGGAATTAAC GGTTAGGTTG
  AAATAAGACA AAATAAAAAA AACTTTCAGG TGGGGAGGGA GGTAATACGC GCGCGCATAT
  GTGTGGTGGG TGGTGGCCAA CATAGGGTTT CTGTAGACCA AGCTGGCTAT GAACTCAGAT
  Y
  GCCTGGTGTG TGCCACAAGC TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTGAGAT
  AGGGTCTCCC ACTGAATCTG GAGCTCCCCC ACTGGGTTAG CCTAGCTGGC TATGGAACTC
  CAGGAGGCTT CTTGTTTCCT CTTTCCCAGC TTTGAAGTTT AAAACATTTA CCTTTTTCCG
  TGGGTGCTGG GTATCGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394675168	MGP_WTSI_15_79159278	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241080742					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394675168	MGP_WTSI_15_79159278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79213048 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	134 bp downstream
Cpgi7329	CpG island 7329	310 bp distal
Pla2g6	phospholipase A2, group VI	458 bp upstream
Rr404497	regulatory region 404497	326 bp downstream
Rr505593	regulatory region 505593	895 bp distal
Rr505594	regulatory region 505594	1107 bp distal
Rr505595	regulatory region 505595	105 bp distal
Rr505596	regulatory region 505596	595 bp proximal
Rr505597	regulatory region 505597	736 bp proximal
Rr505598	regulatory region 505598	1094 bp proximal
Rr505599	regulatory region 505599	1225 bp proximal
Tssr132082	transcription start site region 132082	1254 bp downstream
Tssr135328	transcription start site region 135328	698 bp upstream
Tssr135329	transcription start site region 135329	657 bp upstream
Tssr135330	transcription start site region 135330	587 bp upstream