rs241080806 SNP Detail

Summary

• ID
  rs241080806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:120768859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGTGGA GCTGAGCATG
  GTGGCAGTGG TGGTGCATGC CTTTAATCCC GGCACTTCAG GAGGCAGAGG CAGGCGGATC
  TGAGTTCAAG GCCAGCCAGG GTTATACAGA GAAAAACTGT TTCGGACAAA AACAAAACAA
  CTAAAACCAA ACCAAACCAA ACCACCCCCA CCCCCAACCT ACCAAGAGTT GAAGGTTGGC
  Y
  CTGGCTATGT AAGGAGTACA AGACCAGCCT GGGCTATATT CTCACGTCTC AAAAATCAAA
  TCAAATCAAT CAAACCTGTC TCAATAAACC AACACACATA CATTTCTCCC CCAAAATCTA
  ACCTTCTACA AATAATAAAA TTTATATTAT TGTCTGTCCT CATGCTGTCG CCGTCACCCC
  CCCAACACAC ACACACAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366479323	MGP_WTSI_5_121080803	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241080806					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366479323	MGP_WTSI_5_121080803	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120768859 () rs orientation: forward

Symbol	Name	Function Class
Cfap73	cilia and flagella associated protein 73	within coordinates
Cpgi16507	CpG island 16507	668 bp distal
Cpgi16508	CpG island 16508	298 bp proximal
Gm72343	predicted gene, 72343	within coordinates
Rr108807	regulatory region 108807	1059 bp distal
Rr108808	regulatory region 108808	1142 bp proximal
Tssr1621	transcription start site region 1621	1023 bp upstream
Tssr48527	transcription start site region 48527	738 bp downstream
Tssr48528	transcription start site region 48528	717 bp downstream
Tssr48529	transcription start site region 48529	705 bp downstream
Tssr48530	transcription start site region 48530	693 bp downstream
Tssr52948	transcription start site region 52948	806 bp upstream
Tssr52949	transcription start site region 52949	775 bp upstream