rs241080897 SNP Detail

Summary

• ID
  rs241080897
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67145848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAATATGA GACGGATGCC
  ATCCAGCGCA CAGAGGAGCT GGAAGAGGCC AAGTATGGGT TTCAATGAAT TAGACAGAAA
  GAAACTGAAG TAAAGGAAAA GGGAAGGAAA ATGGGAAGGA ATAATTGTAC CAGGAAGAGC
  ATCAAATAAT TTCACAGCTT CCATATCTAT ACAGTTAAGA GGACCATGTA CTCAGTCTAG
  K
  ATCCCACTAG ACCCTAGTGA AGAAATGCAT CGTTTCCCCT CCCCCTTCTC TCTGGTTTCA
  TAGATATGTT TGAAATAGAC ACTTCAGATG GAAAAGAGCT CCCCTGGGAA ATCAGAATTC
  TGGGAGAGAT AAAATGGTCA CTAAGAAGTA ATTCTGGAAA AACCTATGGG CACAGAGAAA
  TAAGAGATCT TAGGGGAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730885	MGP_WTSI_11_67068524	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241080897					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730885	MGP_WTSI_11_67068524	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67145848 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Rr449442	regulatory region 449442	1036 bp distal
Tssr3528	transcription start site region 3528	279 bp downstream
Tssr3529	transcription start site region 3529	223 bp downstream
Tssr102201	transcription start site region 102201	1504 bp downstream
Tssr102202	transcription start site region 102202	1015 bp downstream
Tssr102203	transcription start site region 102203	952 bp downstream
Tssr102204	transcription start site region 102204	556 bp downstream
Tssr102205	transcription start site region 102205	339 bp downstream
Tssr102206	transcription start site region 102206	235 bp downstream
Tssr102207	transcription start site region 102207	399 bp upstream
Tssr102208	transcription start site region 102208	569 bp upstream
Tssr102209	transcription start site region 102209	604 bp upstream
Tssr102210	transcription start site region 102210	622 bp upstream
Tssr102211	transcription start site region 102211	632 bp upstream
Tssr102212	transcription start site region 102212	654 bp upstream
Tssr102213	transcription start site region 102213	806 bp upstream
Tssr102214	transcription start site region 102214	1162 bp upstream
Tssr102215	transcription start site region 102215	1176 bp upstream
Tssr102216	transcription start site region 102216	1220 bp upstream
Tssr102217	transcription start site region 102217	1374 bp upstream
Tssr108536	transcription start site region 108536	968 bp upstream
Tssr108537	transcription start site region 108537	947 bp upstream
Tssr108538	transcription start site region 108538	437 bp upstream
Tssr108539	transcription start site region 108539	239 bp upstream
Tssr108540	transcription start site region 108540	181 bp upstream
Tssr108541	transcription start site region 108541	413 bp downstream
Tssr108542	transcription start site region 108542	574 bp downstream
Tssr108543	transcription start site region 108543	689 bp downstream
Tssr108544	transcription start site region 108544	1272 bp downstream