rs241085034 SNP Detail

Summary

• ID
  rs241085034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46384286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGTTGGC GATCACATCG
  TAGGACTCCA TGGCAGAGGA ATCTTTCCCT CCGAGGAAGG AACTGCCAGC CCGGTCCGCA
  GCAAACGCCA CTGACACGCA TGCGCAGTCT AGTCGCCGGT ACTGGGCATC CAGGGAGCCG
  CCCGACCTCG CCTCGGAGGA ACTACAATCC CCAGCATTCT TTGCCCCAGG GCTTGCGCTC
  Y
  AAACCGGGTC CCAGCCCGAT CGGATTTAGG AGATTGGACA GTGTATTTCC TACACATGGT
  GGGGTCTGTA GTGTTTGTAG ATTAAAGAGC CACAGTGTTG ATGATTATCT TGCATGACTG
  GATTTGAGAT CCCTTCGAAG GGGTTTCCAG TACACTCTTA AATTTTGGAG TCTGAAGTAC
  TTGTGAGTAG TTGGGTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402595851	MGP_WTSI_19_46470337	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241085034					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402595851	MGP_WTSI_19_46470337	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46384286 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	106 bp upstream
Cpgi11001	CpG island 11001	within coordinates
Cpgi11002	CpG island 11002	843 bp proximal
Gm59146	predicted gene, 59146	within coordinates
Rr405999	regulatory region 405999	507 bp downstream
Rr406000	regulatory region 406000	within coordinates
Rr406001	regulatory region 406001	779 bp upstream
Rr548727	regulatory region 548727	744 bp distal
Rr548728	regulatory region 548728	120 bp distal
Rr548729	regulatory region 548729	within coordinates
Rr548730	regulatory region 548730	559 bp proximal
Rr548731	regulatory region 548731	894 bp proximal
Rr548732	regulatory region 548732	1002 bp proximal
Rr548733	regulatory region 548733	1714 bp proximal
Rr548734	regulatory region 548734	1756 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	1049 bp upstream
Tssr156751	transcription start site region 156751	482 bp downstream
Tssr156752	transcription start site region 156752	454 bp downstream
Tssr156753	transcription start site region 156753	1038 bp upstream
Tssr156754	transcription start site region 156754	1162 bp upstream
Tssr159650	transcription start site region 159650	91 bp upstream