About   Help   FAQ
rs241085722 SNP Detail
Summary
  • ID
    rs241085722
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149979826 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGTGGAGAGG TGTATCCCCC
CACAGTCAAA GACACTCAGG TAGAGATGAT CTACCCTCCT CACATCCCTG AGAACCTGCA
GTTTGCTGTG GGGCAGGAAG TCTTTGGTCT GGTGCCTGGT CTGATGATGT ATGCCACCAT
CTGGCTTCGG GAGCACAACA GAGTGTGCGA CATACTCAAG CAGGAGCATC CTGAGTGGGG
K
GATGAGCAAC TATTCCAAAC CAGCAGACTC ATACTCATAG GTGAGCAAGA GAGAAATAAC
AAGTAAGATC ATCTTCCCCT CAGAAAAGAA AAACTCTTCC ATTTGCTATG TTTTGATTCC
TTCTTGTGAA TAGGGAGAGT AAATGTGATC TGGTAACATC CCTACCATTT GTTGTAAGGA
AACTAAAGTC TCTGTGTTGT                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351888751 MGP_WTSI_1_151951205 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241085722 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351888751 MGP_WTSI_1_151951205 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149979826 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Rr12935 regulatory region 12935 175 bp proximal
Rr24983 regulatory region 24983 207 bp proximal
Tssr242 transcription start site region 242 1270 bp downstream
Tssr9230 transcription start site region 9230 1962 bp downstream
Tssr9231 transcription start site region 9231 1929 bp downstream
Tssr9232 transcription start site region 9232 1886 bp downstream
Tssr9233 transcription start site region 9233 1430 bp downstream
Tssr9234 transcription start site region 9234 1401 bp downstream
Tssr9235 transcription start site region 9235 1370 bp downstream
Tssr9236 transcription start site region 9236 1345 bp downstream
Tssr9237 transcription start site region 9237 1313 bp downstream
Tssr9238 transcription start site region 9238 1282 bp downstream
Tssr9239 transcription start site region 9239 1248 bp downstream
Tssr9240 transcription start site region 9240 1234 bp downstream
Tssr9241 transcription start site region 9241 1204 bp downstream
Tssr9242 transcription start site region 9242 1188 bp downstream
Tssr9243 transcription start site region 9243 1061 bp downstream
Tssr9244 transcription start site region 9244 1010 bp downstream
Tssr9245 transcription start site region 9245 974 bp downstream
Tssr9246 transcription start site region 9246 955 bp downstream
Tssr9247 transcription start site region 9247 820 bp downstream
Tssr9248 transcription start site region 9248 387 bp downstream
Tssr9249 transcription start site region 9249 373 bp downstream
Tssr9250 transcription start site region 9250 172 bp downstream
Tssr9251 transcription start site region 9251 120 bp downstream
Tssr9252 transcription start site region 9252 85 bp downstream
Tssr9253 transcription start site region 9253 60 bp downstream
Tssr9254 transcription start site region 9254 44 bp downstream
Tssr9255 transcription start site region 9255 within coordinates
Tssr9256 transcription start site region 9256 202 bp upstream
Tssr9257 transcription start site region 9257 226 bp upstream
Tssr9258 transcription start site region 9258 249 bp upstream
Tssr9259 transcription start site region 9259 274 bp upstream
Tssr9260 transcription start site region 9260 329 bp upstream
Tssr9261 transcription start site region 9261 384 bp upstream
Tssr9262 transcription start site region 9262 392 bp upstream
Tssr9263 transcription start site region 9263 414 bp upstream
Tssr9264 transcription start site region 9264 459 bp upstream
Tssr9265 transcription start site region 9265 490 bp upstream
Tssr9266 transcription start site region 9266 579 bp upstream
Tssr9267 transcription start site region 9267 870 bp upstream
Tssr9268 transcription start site region 9268 926 bp upstream
Tssr9269 transcription start site region 9269 1309 bp upstream
Tssr9270 transcription start site region 9270 1349 bp upstream
Tssr9271 transcription start site region 9271 1373 bp upstream
Tssr9272 transcription start site region 9272 1403 bp upstream
Tssr9273 transcription start site region 9273 1455 bp upstream
Tssr9274 transcription start site region 9274 1473 bp upstream
Tssr9275 transcription start site region 9275 1500 bp upstream
Tssr9276 transcription start site region 9276 1515 bp upstream
Tssr9277 transcription start site region 9277 1565 bp upstream
Tssr9278 transcription start site region 9278 1586 bp upstream
Tssr9279 transcription start site region 9279 1607 bp upstream
Tssr9280 transcription start site region 9280 1624 bp upstream
Tssr9281 transcription start site region 9281 1730 bp upstream
Tssr9282 transcription start site region 9282 1765 bp upstream
Tssr9283 transcription start site region 9283 1779 bp upstream
Tssr9284 transcription start site region 9284 1794 bp upstream
Tssr9285 transcription start site region 9285 1804 bp upstream
Tssr9286 transcription start site region 9286 1888 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory