rs241089780 SNP Detail

Summary

• ID
  rs241089780
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34759565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGTATAT GGTGATTTTC
  TAACAACTTT TTTTTTTTTT TTTTTTTTTT TTTGAGACAG GGTTTCTCTG TGTAGCCCTG
  GCTGTCCTGG AACTCACTCT GTAGACCAGG TTAGCCTTGA ACTCAGAAAT TCACCTGCCT
  CTGCCTCCCA AGTGCTGGAA TTAAAGGTGT GTGCCACCAT GCCCAGCCTC TAACAACTCA
  K
  TCTTACTCAG GAAAGCCAGG ATTGCAGGGC AGTGTTGGAC AGGGAAGGGT AACAGAATTC
  ATGTGTGCTA GAATGATGTG GAACCAAAGA ATGGCTGCAC AGGACCACTT AACGCTTACT
  GAGGAATGAG GGAGCAGAAG CATGCTTCCT AGGATCTAGG CTGTTTGTCC TGGCTTACAG
  GTTAACTCGA GAATCTGTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400243413	MGP_WTSI_18_34786166	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241089780					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400243413	MGP_WTSI_18_34786166	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34759565 () rs orientation: forward

Symbol	Name	Function Class
Brd8	bromodomain containing 8	1911 bp upstream
Cpgi9821	CpG island 9821	1290 bp distal
Kif20a	kinesin family member 20A	within coordinates
Rr352687	regulatory region 352687	164 bp distal
Rr353827	regulatory region 353827	1836 bp proximal
Rr370356	regulatory region 370356	1818 bp downstream
Rr405583	regulatory region 405583	1485 bp downstream
Tssr5275	transcription start site region 5275	1910 bp upstream
Tssr150465	transcription start site region 150465	1883 bp downstream
Tssr150466	transcription start site region 150466	1850 bp downstream
Tssr150467	transcription start site region 150467	1512 bp downstream
Tssr150468	transcription start site region 150468	1481 bp downstream
Tssr150469	transcription start site region 150469	1459 bp downstream
Tssr152814	transcription start site region 152814	1921 bp upstream
Tssr152815	transcription start site region 152815	1697 bp upstream
Tssr152816	transcription start site region 152816	1668 bp upstream