rs241093590 SNP Detail

Summary

• ID
  rs241093590
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29229579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGAGGGC CCAGCCTGGC
  GGCCGCTCGA CCCTGCGCCC GGCCCGGGGG CTCCCTAGAC CTCGGCCCGC CCGACGCGTC
  TCGGAGGAGC GGATCCTGCG CGCCTCGGGG CGCTCCTGTG TGGCCCGACC CGTGTCGCCG
  GTGGGTGCAG TCCCTGGCTG CTGGATGGGG GCGGGGGGCA GCGGTTCTCC CTGCGATCCC
  S
  CCTCCTGCTT TCCCCTTAGC CCCCTGCTAC TGGCAGGGAA CTTCAAAGCT AGAAAACCTG
  CGGGTTTCCG ACAGCCTAGG AAGGAGTGGC TAGCTGTTGA TAAATGCATG CATCCCCTTG
  TGCCTTAGAA CCCGACCCCC CCTCTTTCTT ATTCTTCTGT ACATTTTTCT AGTCATCTAA
  ACAGCGCAGA AAAAAAAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402211704	MGP_WTSI_19_29326669	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241093590					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402211704	MGP_WTSI_19_29326669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29229579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	within coordinates
Gm41829	predicted gene, 41829	within coordinates
Gm59364	predicted gene, 59364	678 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	1667 bp upstream
Rr546087	regulatory region 546087	852 bp distal
Rr546088	regulatory region 546088	341 bp distal
Rr546089	regulatory region 546089	556 bp distal
Rr546090	regulatory region 546090	within coordinates
Rr546091	regulatory region 546091	273 bp proximal
Rr546092	regulatory region 546092	1791 bp proximal
Tssr155779	transcription start site region 155779	1541 bp downstream
Tssr155780	transcription start site region 155780	514 bp downstream
Tssr155781	transcription start site region 155781	325 bp downstream
Tssr155782	transcription start site region 155782	312 bp downstream
Tssr155783	transcription start site region 155783	278 bp downstream
Tssr155784	transcription start site region 155784	121 bp upstream
Tssr155785	transcription start site region 155785	250 bp upstream
Tssr155786	transcription start site region 155786	275 bp upstream
Tssr155787	transcription start site region 155787	375 bp upstream
Tssr158749	transcription start site region 158749	74 bp upstream