rs241097467 SNP Detail

Summary

• ID
  rs241097467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190713349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTTGGG ATGGAAACCT
  CTATGAGGCA GGCAGGGTGG GAGCCAGGAT CAGTAGAGGA TCAATGGAGG CAACCTGGGT
  TCTAAACCTA CCAGGACAGA GCCCTGGGCA TGAGACTATG GATGGAGTCA TCACTGAGCA
  CAGTAACGCC AGTCTATGTC AGAACATTCT TAACGGTCCT CGGGCAACAA GCACACCTGG
  R
  AAAGAATCAG GAGGGAGAAG ACAATGTGTG CCCAGGGAAT CTCGTTCCTA ATTAAAAGGA
  AACCCACCTG TTTGCTCATC CCAAACGCCC TTCTCTCCTG TCTGCAGTTC ATCCTTAAGT
  CCATCTCTCT CCCTTCCACG TCCCTGGTAC CCAGACCAGA AAAGGAACTC AGGGCAGCAC
  TTCTGTGGAC TGGGATTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320194443	CHEV_1_192805031	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241097467					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190713349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1214	CpG island 1214	1544 bp distal
Tssr15742	transcription start site region 15742	1998 bp upstream
Tssr15743	transcription start site region 15743	1974 bp upstream
Tssr15744	transcription start site region 15744	1962 bp upstream
Tssr15745	transcription start site region 15745	1920 bp upstream
Tssr15746	transcription start site region 15746	1880 bp upstream
Tssr15747	transcription start site region 15747	1850 bp upstream
Vash2	vasohibin 2	1856 bp upstream