rs241100160 SNP Detail

Summary

• ID
  rs241100160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44467180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGATAGAG CTCAAGAATG
  CTCGTCTGTT TTTAACACCA GAACCTTAGT CTCTGTCCAA GCACCACATG GATTGGGCTT
  GACTTGCCTG TATTCTCAGG ATTTGGGAGA TGGGAGAAAA GAAATCATGA GTTCAGGGTC
  ATACTGACTG GCCTCAATGT GTTTTAAAAA GAAAAAGTCC AGAGGCCAGG CTTGATATCT
  Y
  ACCTACTTAG GAGGCTAAGA CAGGAGTATT GAAAGTCAAG GTCAGGGCTG GAGCTGCTTT
  GAGATGGCTC TGGTGGTGAT CTCTAAACTC AACCCTCCTG AGTTCCATCC TCAGGACCCA
  CTTGGTAGAA GGACAAAAGC AACTCTAGAC GGTTGTCCTC TGACCTCCAC CACCTGTAGT
  GACAGGTCTA CATACTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371164333	MGP_WTSI_7_52073126	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241100160					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371164333	MGP_WTSI_7_52073126	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44467180 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	1098 bp upstream
Cpgi18994	CpG island 18994	702 bp distal
Il4i1b	interleukin 4 induced 1B	within coordinates
Nup62	nucleoporin 62	within coordinates
Rr400297	regulatory region 400297	1683 bp downstream
Rr646219	regulatory region 646219	1350 bp distal
Rr646220	regulatory region 646220	1193 bp distal
Rr646221	regulatory region 646221	608 bp distal
Rr646222	regulatory region 646222	487 bp proximal
Rr646223	regulatory region 646223	509 bp proximal
Rr646224	regulatory region 646224	1733 bp proximal
Tssr66426	transcription start site region 66426	1816 bp downstream
Tssr66427	transcription start site region 66427	1448 bp downstream
Tssr66428	transcription start site region 66428	1422 bp downstream
Tssr66429	transcription start site region 66429	1381 bp downstream
Tssr66430	transcription start site region 66430	1350 bp downstream
Tssr72232	transcription start site region 72232	1830 bp upstream
Tssr72233	transcription start site region 72233	1148 bp upstream
Tssr72234	transcription start site region 72234	790 bp upstream