rs241109030 SNP Detail

Summary

• ID
  rs241109030
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74768813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACAGCGT CCCGACCTAG
  GCCTTCAGGG TATATACACG TCCCAAGTCC CCGTAGGACA ACTATTTAAG GACAGTGAAT
  GAGTTGGTCT CCAGCGATCC TCTAGGGAAT AAAGCCCAAT GGGCGAGTGG GCTTTGGGCC
  ATGACATAGT TTCTACTCCC CGCCGGTAAC CTGTACCGGG AACTAGCAAC TCAGACTCAG
  S
  GGCTCTGGTT CTCAAACCTA GCTGGCTCAC GGTGACAGAA ACCAGGCAAG AAAGTCCGGA
  TGGAAAGAGA GAGGGAGGTA GTGAGGAAGA CCAGGAGGTA GCAAGTCTCC GAGGACTGTG
  GAGGCGGCTC CAGGTCGCAC TCTGCGCGCG TCCCGTGCAC GTGCTCACTG ATCCCGGGCC
  ATTCGGCGCC GCTGAGAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378074127	MGP_WTSI_9_74709338	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241109030					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378074127	MGP_WTSI_9_74709338	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74768813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22034	CpG island 22034	within coordinates
Gm20649	predicted gene 20649	within coordinates
Gm33562	predicted gene, 33562	within coordinates
Gm68752	predicted gene, 68752	within coordinates
Onecut1	one cut domain, family member 1	390 bp upstream
Rr206725	regulatory region 206725	within coordinates
Tssr2940	transcription start site region 2940	405 bp upstream
Tssr86108	transcription start site region 86108	326 bp upstream
Tssr86109	transcription start site region 86109	344 bp upstream
Tssr86110	transcription start site region 86110	357 bp upstream
Tssr90520	transcription start site region 90520	1864 bp downstream