rs241121965 SNP Detail

Summary

• ID
  rs241121965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:93774856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGCGCAC ACGCAAGCAC
  ATGCACGCAC ACACACTCCT TATACTACAA TAGCCTATAG AATGCTTTTG CTTTCCTGGT
  GTGCTGATGA AATAATGTGA TGGAACACAA CCACAGCACA TGCTGAAGGA GCACGCAGGA
  AAGGAGATCA GAACCACCAT GAGGACAGGT GAGGCAGGAT AGAAGGGGGG GGGGGGGGGG
  R
  AGTGCACGGA AAGCTAAAGA CCGCAGTAGA CAAGGGTAAA AGGTAAGCCG CCGGCAGGTA
  AAGAGCAAGC ATCAAAGCCC AACAGTTACA GAGCCCGGGG CCTACTAGAA TCCCACACAA
  CATAGGCTGT GTCTCATAGC CTCATGAGGA GTATCTCTTG TTCTATGTGC TCCATCTCCA
  CCTTCTTCAA ACTTTATACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss384313866	MGP_WTSI_11_93745344	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs241121965					SNP	G	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384313866	MGP_WTSI_11_93745344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93774856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3539	CpG island 3539	792 bp proximal
Gm72169	predicted gene, 72169	within coordinates
Mbtd1	mbt domain containing 1	1822 bp upstream
Rr247507	regulatory region 247507	within coordinates
Rr366736	regulatory region 366736	1654 bp upstream
Tssr3641	transcription start site region 3641	1794 bp upstream
Tssr104149	transcription start site region 104149	1072 bp upstream
Tssr104150	transcription start site region 104150	1241 bp upstream
Tssr104151	transcription start site region 104151	1854 bp upstream
Tssr110106	transcription start site region 110106	232 bp downstream
Tssr110107	transcription start site region 110107	1630 bp downstream
Tssr110108	transcription start site region 110108	1694 bp downstream
Tssr110109	transcription start site region 110109	1722 bp downstream
Utp18	UTP18 small subunit processome component	within coordinates