rs241127610 SNP Detail

Summary

• ID
  rs241127610
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66135401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATGAGA TTAAAGAAGG
  GAAGACTGGA AGTGGGTGGA CAAGCTGCGT GGGAAGACTC GGGAACACGC GGGGAACCTG
  CCGGTTAGGG GGACCGGGAC TTGGGGCTGC CTGGGGAGTC CTGCCCCAGT GCATGTGGCA
  TGCAGGGCTG GAGCTGATCC TCTGCACTGC AGGGCACTGG GGAGACAGAC CGAGGAGACG
  R
  AAGGCAAGGA GGGAACCCGC CCCTCGCCCC AGCCCCGGCT TACTCCCCGC GTGGGCCCAA
  AAGGGCACGG TCCCATCGCT CTGCACCAGA TGCGGCCCCT TAAAGCTGTA TTTGTACTCG
  AAACGGCGGT GTGGCAACTC GGCCTGGGTG CCCGCGGCGC CGGGAGCCGC AGCGTCGCCT
  CCCGTGCCGT CGCTCCCGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658936	CHEV_18_66161984	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241127610					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66135401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	within coordinates
Lman1	lectin, mannose-binding, 1	within coordinates
Rr353056	regulatory region 353056	within coordinates
Rr355117	regulatory region 355117	1601 bp proximal
Rr405704	regulatory region 405704	217 bp upstream
Tssr153727	transcription start site region 153727	282 bp downstream